Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
Ultra-fast maximum likelihood ancestral state reconstruction
Phylopars regression ANOVA
Fast Phylogenetic Signal Using Sum of Squared Changes (SSC)
Extract Log_likelihood
Extract Log_likelihood
Rphylopars regression
Estimation of phylogenetic and phenotypic covariance parameters
Print phylopars.lm
Print phylopars
Print SSC
Phylogenetic Comparative Tools for Missing Data and Within-Species Var...
Simulate traits for phylopars estimation
phylopars.lm summary
Phylopars summary
Write data and tree files for Python phylopars compatability.
Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.