SeuratExplorer0.1.2 package

An 'Shiny' App for Exploring scRNA-seq Data Processed in 'Seurat'

cellRatioPlot

plot cell percentage barplot

explorer_body_ui

generate the body UI for each menu item specified in `explorer_sidebar...

explorer_server

server side functions related to explorer_sidebar_ui

explorer_sidebar_ui

some menu items of the dashboard sidebar

get_counts_matrix

Helper function to extract counts matrix with proper handling

get_data_matrix

Helper function to extract data matrix with proper handling

getColors

getColors

join_layers_if_needed

Helper function to join layers for Assay5 objects

launchSeuratExplorer

Launch shiny app

prepare_gene_annotations

extract the features from row names or annotation slot of assays

server

Server

top_genes

Find Top Genes by Cell

ui

UI

Download source packageRead PDF manual

A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.

  • Maintainer: Yongchao Zhang
  • License: GPL (>= 3)
  • Last published: 2026-01-19

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