Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
Function to perform adonis test of independence on p-values from tests...
Function to export a NEXUS file that can be opened in FigTree to p...
Function to produce a CSV file with the p-value for each branch as wel...
Function to convert two-tailed p-values to one-tailed, for use by othe...
Function to plot the phylogenetic tree in R with branches (tips) color...
Determine significantly responsive branches in phylogenetic trees
SigTree Other Functions
Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.