TraMineR2.2-11 package

Trajectory Miner: a Sequence Analysis Toolkit

plot.subseqelistchisq

Plot discriminant subsequences

alphabet

Get or set the alphabet of a state or event sequence object

disstreeleaf

Terminal node membership

dissvar

Dissimilarity based discrepancy

is.stslist

Test if is a proper state sequence (stslist) object

plot.seqdiff

Plotting a seqdiff object.

print.stslist

Print method for state sequence objects

read.tda.mdist

Read a distance matrix produced by TDA.

seqecontain

Check if sequence contains events

seqecreate

Create event sequence objects.

seqefsub

Searching for frequent subsequences

seqeid

Retrieve unique ids from an event sequence object.

seqelength

Lengths of event sequences

seqetm

Create a transition-definition matrix

seqeweight

Setting or retrieving weights of an event sequence object.

seqfcheck

Check if sequences are in the compressed or extended format

seqfind

Indexes of state sequence(s) x in state sequence object y

seqformat

Conversion between sequence formats

seqfpos

Search for the first occurrence of a given element in a sequence

seqfposend

End of first spell in given state

seqgen

Random sequences generation

seqhasmiss

Count and identification of sequences with nr and void missings

seqibad

Badness index

seqici

Complexity index of individual sequences

seqient

Within sequence entropies

seqindic

Sequence indicators

seqintegr

Integrative potential

seqipos

Indicators for binary sequences of positive and negative states.

seqistatd

State frequencies in each individual sequence

seqivardur

Variance of spell durations in individual sequences

seqivolatility

Volatility of individual state sequences

seqlegend

Plot a legend for the states in a sequence object

seqlength-align

Align sequence length across domains

seqlength

Sequence length

seqLLCP

Compute the length of the longest common prefix of two sequences

seqLLCS

Compute the length of the longest common subsequence of two sequences

seqlogp

Logarithm of the probabilities of state sequences

seqstatf

State frequencies in the whole sequence data set

seqstatl

List of distinct states or events (alphabet) in a sequence data set.

seqdim

Dimension of a set of sequences

seqdist

Distances (dissimilarities) between sequences

seqdomassoc

Measures of association between domains of sequence data

seqpcplot

Parallel coordinate plot for sequence data

seqplot

Plot state sequence objects

seqplotMD

Plot multidomain state sequences

seqpm

Find substring patterns in sequences

seqprecarity

Degradation, Precarity, and Insecurity indexes

seqprecstart

State precarity

seqrecode

Recoding state sequence objects and factors

seqrep

Extracting sets of representative sequences

seqsep

Adds separators to sequences stored as character string

seqST

Sequences turbulence

seqstatd

Sequence of transversal state distributions and their entropies

cpal

Get or set the color palette of a sequence object

dissassoc

Analysis of discrepancy from dissimilarity measures

disscenter

Compute distances to the center of a group

dissdomassoc

Domain association measures

dissmergegroups

Merging groups by minimizing loss of partition quality.

dissmfacw

Multi-factor ANOVA from a dissimilarity matrix

dissrep

Extracting sets of representative objects using a dissimilarity matrix

dissrf

Relative Frequency Groups.

disstree-assign

Assign rules to profiles provided

disstree-get-rules

Tree classification rules

disstree

Dissimilarity Tree

disstree2dot

Graphical representation of a dissimilarity tree

plot.seqrf

Plot method for seqrf objects of relative frequency groups of sequence...

plot.stslist.freq

Plot method for sequence frequency tables

plot.stslist.meant

Plot method for objects produced by the seqmeant function

plot.stslist.modst

Plot method for modal state sequences

plot.stslist

Plot method for state sequence objects

plot.stslist.rep

Plot method for representative sequence sets

plot.stslist.statd

Plot method for objects produced by the seqstatd function

plot.subseqelist

Plot frequencies of subsequences

seqalign

Computation details about a pairwise alignment

seqcomp

Compare two state sequences

seqconc

Concatenate vectors of states or events into a character string

seqcost

Generate substitution and indel costs

seqdecomp

Convert a character string into a vector of states or events

seqdef

Create a state sequence object

seqdiff

Position-wise discrepancy analysis between groups of sequences

seqdss

Extract sequences of distinct successive states

seqdur

Extract state durations from a sequence object.

seqe

Event sequence object

seqeapplysub

Checking for the presence of given event subsequences

seqecmpgroup

Identifying discriminating subsequences

seqeconstraint

Setting time constraints and the counting method

seqmaintokens

Indexes of most frequent tokens

seqMD

Multidomain sequences

seqmeant

Mean durations in each state

seqmodst

Sequence of modal states

seqmpos

Number of matching positions between two sequences.

seqnum

Transform into a sequence object with numerical alphabet.

seqsubsn

Number of distinct subsequences in a sequence.

seqtab

Frequency table of the sequences

seqtransn

Number of transitions in a sequence

seqtrate

Compute transition rates between states

seqtree

Tree structured analysis of a state sequence object.

seqtreedisplay

Graphical rendering of a sequence regression tree

stlab

Get or set the state labels of a sequence object

str.eseq

String representation of an event sequence object

TraMineR-package

Trajectory Miner: Sequence Analysis Toolkit

TraMineR.check.depr.args

Checking and managing deprecated arguments

TraMineRInternal

Access to TraMineR internal functions

Set of sequence analysis tools for manipulating, describing and rendering categorical sequences, and more generally mining sequence data in the field of social sciences. Although this sequence analysis package is primarily intended for state or event sequences that describe time use or life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and functions for extracting the most frequent event subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.