baggr0.7.8 package

Bayesian Aggregate Treatment Effects

add_color_to_plot

Add colors to baggr plots

baggr-package

baggr - a package for Bayesian meta-analysis

baggr

Bayesian aggregate treatment effects model

baggr_compare

(Run and) compare multiple baggr models

baggr_plot

Plotting method in baggr package

baggr_theme_set

Set, get, and replace themes for baggr plots

binary_to_individual

Generate individual-level binary outcome data from an aggregate statis...

bubble

Bubble plots for meta-regression models

convert_inputs

Convert inputs for baggr models

effect_draw

Make predictive draws from baggr model

effect_plot

Plot predictive draws from baggr model

fixed_effects

Effects of covariates on outcome in baggr models

forest_plot

Draw a forest plot for a baggr model

get_order

Separate out ordering so we can test directly

group_effects

Extract baggr study/group effects

is.baggr_cv

Check if something is a baggr_cv object

labbe

L'Abbe plot for binary data

loo_compare

Compare LOO CV models

loocv

Leave one group out cross-validation for baggr models

mint

"Mean and interval" function, including other summaries, calculated fo...

mutau_cor

Correlation between mu and tau in a baggr model

plot.baggr

Plotting method for baggr outputs

plot.baggr_compare

Plot method for baggr_compare models

plot.baggr_cv

Plotting method for results of baggr LOO analyses

plot_quantiles

plot quantiles

pooling

Pooling metrics and related statistics for baggr

prepare_ma

Convert from individual to summary data in meta-analyses

prepare_prior

Prepare prior values for Stan models in baggr

print.baggr

S3 print method for objects of class baggr (model fits)

print.baggr_compare

Print method for baggr_compare models

print.baggr_cv

Print baggr cv objects nicely

print.compare_baggr_cv

Print baggr_cv comparisons

print_dist

Output a distribution as a string

priors

Prior distributions in baggr

random_effects

Extract only random effects from a baggr model

set_prior_val

Add prior values to Stan input for baggr

single_comp_plot

Plot single comparison ggplot in baggr_compare style

treatment_effect

Average treatment effects in a baggr model

Running and comparing meta-analyses of data with hierarchical Bayesian models in Stan, including convenience functions for formatting data, plotting and pooling measures specific to meta-analysis. This implements many models from Meager (2019) <doi:10.1257/app.20170299>.

  • Maintainer: Witold Wiecek
  • License: GPL (>= 3)
  • Last published: 2024-02-12