cmpp0.0.2 package

Direct Parametric Inference for the Cumulative Incidence Function in Competing Risks

bootstrap_variance

Estimate Variance of Parameters Using Bootstrap Method

cdf_gomp

Compute the CDF of the Gompertz Distribution

CIF_Figs

Plot Cumulative Incidence Functions (CIF) with Confidence Intervals

CIF_res1

Compute Cumulative Incidence Function (CIF) Results

Cleanup

Clean up memory by deleting the pointer to the Cmpp instance

Cmpp_CIF

Compute and Plot Cumulative Incidence Functions (CIF) for Competing Ri...

cmpp

Direct Parametric Inference for the Cumulative Incidence Function in C...

compute_grad

Compute the Numerical Gradient of the Log-Likelihood

compute_hessian

Compute the Hessian Matrix of the Log-Likelihood

compute_log_f_gradient_rcpp

Compute the Gradient of the Log-Likelihood Function Generalized odds r...

compute_log_f_gradient_rcpp2

Compute the Gradient of the Log-Likelihood Function Proportional Odds ...

compute_log_f_gradient_rcpp3

Compute the Gradient of the Log-Likelihood Function Proportional Hazar...

compute_log_f_hessian_rcpp

Compute the Hessian Matrix of the Log-Likelihood Function Generalized ...

estimate_parameters_GOR

Estimate Parameters for the Generalized odds rate (GOR)

estimate_parameters_PHM

Estimate Parameters for the Proportional Hazards Model (PHM)

estimate_parameters_POM

Estimate Parameters for the Proportional Odds Model (POM)

estimate_parameters

Estimate Model Parameters Using Optimization

F_cdf_rcpp

Compute the CDF of the Parametric Generalized odds rate (GOR)

F_cdf_rcpp2

Compute the CDF of the Parametric Proportional Odds Model (POM)

F_cdf_rcpp3

Compute the CDF of the Parametric Proportional Hazards Model (PHM)

f_pdf_rcpp

Compute the PDF of the Parametric Generalized odds rate (GOR)

f_pdf_rcpp2

Compute the PDF of the Parametric Proportional Odds Model (POM)

f_pdf_rcpp3

Compute the PDF of the Parametric Proportional Hazards Model (PHM)

FineGray_Model

Fine-Gray Model for Competing Risks Data

GetData

Retrieve Initialized Data from the Cmpp Model

GetDim

Get Dimensions of the Cmpp Object

Initialize

Initialize Data for the Cmpp Model

log_f_rcpp

Compute the Log-Likelihood Function Generalized odds rate (GOR)

log_f_rcpp2

Compute the Log-Likelihood Function Proportional Odds Model (POM)

log_f_rcpp3

Compute the Log-Likelihood Function Proportional Hazards Model (PHM)

LogLike1

Compute the Log-Likelihood for the Model

make_Dummy

Create Dummy Variables

makeMat

Create a matrix of given size filled with a constant value

pdf_gomp

Compute the PDF of the Gompertz Distribution

Implements parametric (Direct) regression methods for modeling cumulative incidence functions (CIFs) in the presence of competing risks. Methods include the direct Gompertz-based approach and generalized regression models as described in Jeong and Fine (2006) <doi:10.1111/j.1467-9876.2006.00532.x> and Jeong and Fine (2007) <doi:10.1093/biostatistics/kxj040>. The package facilitates maximum likelihood estimation, variance computation, with applications to clinical trials and survival analysis.

  • Maintainer: Habib Ezzatabadipour
  • License: GPL (>= 2)
  • Last published: 2025-05-02