avecRentrez function

function to query NCBI database servers using the "rentrex" library

function to query NCBI database servers using the "rentrex" library

avecRentrez( DB = "nucleotide", max.nr.recs = 20000, chunkSize = 100, accOnly = TRUE )

Arguments

  • DB: database
  • max.nr.recs: maximun number of records to retrieve, there are limitations in the fns and server sides
  • chunkSize: number of records to retrieve at once
  • accOnly: boolean indicator for getting only accession codes or whole records