covid19.analytics2.1.3.3 package

function to query NCBI database servers using the "rentrex" library

bad argument error handling function

function to obtain FASTA sequence of the SARS-CoV-2 virus

function to obtain genomic data from SARS-CoV-2019

function to obtain FASTA seqs for nucleotides or proteins from SARS-Co...

function to obtain data for nucleotides or proteins from SARS-CoV-2

function to read data from OWID repos

function to obtain "Tree of complete SARS-CoV-2 Sequences as obtained ...

function to obtain sequencing data grom NCBI Reference: https://www.nc...

function to check the geographical location

auxiliary function to check whether a dataset is composed of time seri...

function to draw confidence bands, using generalized moving averages/s...

function that determines whether there are consistency issues within t...

function to import data for Canada as reported by Health Canada https:...

function to read "live" data from reported covid19 cases

main master (wrapper) function to obtain different types of genomic da...

function to read "live" data as reported by JHU's CCSE repository

function to read data related to covid19 Testing from OWID repo

function to import data from the city of Toronto, ON - Canada as repor...

function to import data from the city of Toronto, ON - Canada as repor...

function to import data from the city of Toronto, ON - Canada as repor...

function to read CSV from URLs or local replicas

function to read the TimeSeries US detailed data

function to read data related to covid19 vaccinations

covid19.analytics explorer dashboard

covid19.analytics explorer dashboard

function to check for data integrity and data consistency

estimate rolling rates for a given geographical location for an specif...

function to generate models using GLM

function to generate a simple SIR (Susceptible-Infected-Recovered) mod...

function to generate models using Linear Regression "LM"

function to define continents and its constituent countries

auxiliary function to download files in a protected fashion, i.e. agai...

function to compute daily changes and "Growth Rates" per location; "Gr...

auxiliary fn to print "headers" adn 'titles'

auxiliary fn to print "headers" adn 'titles'

function that determines whether there are integrity issues within the...

function to visualize trends in daily changes in time series data inte...

function to map cases in an interactive map

auxiliary function to check and load an specific set of libraries

aux fn to create a log-scale pulldown option in plotly plots

generic fn that computes the "fn" on a moving window

function to compute a rolling fn (rate) of multiple quantities from TS...

function to visualize different indicators for trends in daily changes...

remove inconsistencies from data by removing 'suspicious' entries

function to define the OWID repos URLs

function to retrieve historical pandemics data

internal function to retrieve historical data on pandemics

function to plot the results from the SIR model fn

auxiliary function to pre-process data per geographical location

method associated with 'report' objects

function associated to the 'report' object method

function to redirect users to install devel version from github

function to summarize the current situation, will download the latest ...

function to obtain main indicators from Toronto data

function to compute a rolling fn of a TS data

auxiliary function to select data based on geographical location

auxiliary function to set the graphical layout

Define an ODE system for a simple SIR model

function to visualize different indicators for trends in daily changes...

function to perform a sweep of models and generate values of R0

function to plot total number of cases per day for different groups

function to compute totals per location

function to obtain sequencing data grom NCBI Reference: https://www.nc...