dclone2.3-2 package

Data Cloning and MCMC Tools for Maximum Likelihood Methods

bugs.fit

Fit BUGS models with cloned data

bugs.parfit

Parallel computing with WinBUGS/OpenBUGS

clusterSize

Optimizing the number of workers

clusterSplitSB

Size balancing

codaSamples

Generate posterior samples in mcmc.list format

coef.mcmc.list

Methods for the 'mcmc.list' class

dc.fit

Iterative model fitting with data cloning

dc.parfit

Parallel model fitting with data cloning

dcFit

Internal function for iterative model fitting with data cloning

dclone-package

Data Cloning

dclone

Cloning R objects

DcloneEnv

Manipulating dclone environments

dcoptions

Setting Options

dctable

Retrieve descriptive statistics from fitted objects to evaluate conver...

errlines

Plot error bars

evalParallelArgument

Evaluates parallel argument

jags.fit

Fit JAGS models with cloned data

jags.parfit

Parallel computing with JAGS

jagsModel

Create a JAGS model object

lambdamax.diag

Data Cloning Diagnostics

make.symmetric

Make a square matrix symmetric by averaging.

mclapplySB

Size balancing version of mclapply

mcmcapply

Calculations on 'mcmc.list' objects

nclones

Number of Clones

pairs.mcmc.list

Scatterplot Matrices for 'mcmc.list' Objects

parallel.inits

Parallel RNGs for initial values

parCodaSamples

Generate posterior samples in 'mcmc.list' format on parallel workers

parDosa

Parallel wrapper function to call from within a function

parJagsModel

Create a JAGS model object on parallel workers

parLoadModule

Dynamically load JAGS modules on parallel workers

parSetFactory

Advanced control over JAGS on parallel workers

parUpdate

Update jags models on parallel workers

stan.fit

Fit Stan models with cloned data

update.mcmc.list

Automatic updating of an MCMC object from JAGS

write.jags.model

Write and remove model file

Low level functions for implementing maximum likelihood estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods as described in Solymos 2010 <doi:10.32614/RJ-2010-011>. Sequential and parallel MCMC support for 'JAGS', 'WinBUGS', 'OpenBUGS', and 'Stan'.

  • Maintainer: Peter Solymos
  • License: GPL-2
  • Last published: 2023-07-03