Differential Co-Expression and Differential Expression Analysis
Calculate the p-value between selected genes and functional gene set
Get best associated functional gene sets for partitions of gene i
Adjust p-value by Bonferroni correction
Perform chi-square optimization
Adjust p-value by Benjamini and Hochberg method
Get gene index of 8 partitions for gene i
read functional gene sets
Open file to write result
Differential Co-Expression and Differential Expression Analysis
Summarize the functional gene set results into text file
Integrated differential expression (DE) and differential co-expression (DC) analysis on gene expression data based on DECODE (DifferEntial CO-expression and Differential Expression) algorithm.