Mixed-Effects Models Enhancing Functions
Function for creating B-spline basis functions (Eilers & Marx, 2010)
Build a hybrid marker matrix using parental genotypes from inbred indi...
Mixed Effect Model Enhancing Functions
Identity relationship matrix
Imputing a numeric or character vector
Generate a sequence of colors alog the jet colormap.
Calculation of linkage disequilibrium decay
Legendre polynomial matrix
Decreasing logarithmic trend
Create a GE correlation matrix for simulation purposes.
Standardize a vector of values in range 0 to 1
Get Tensor Product Spline Mixed Model Incidence Matrices
Creating color with transparency
Wald Test for Model Coefficients
Replace the values of a vector
reduced rank matrix
Image of sparsity between two variables
Shortcut to sparse matrix image
Additive relationship matrix
add.diallel.vars
Binds arrays corner-to-corner
Letter to number converter
Letter to number converter
Generate a sequence of colors for plotting bathymetric data.
Creating a manhattan plot
Creating a genetic map plot
Effective population size based on marker matrix
Overlay Matrix
Proportion of missing data
Reduced Model Matrix
Special functions that enhance other mixed effect model packages by creating overlayed, reduced rank, and reduced model matrices together with multiple data sets to practice the use of these models. For more details see Covarrubias-Pazaran (2016) <doi:10.1371/journal.pone.0156744>.