Classes and Helper Functions for Working with Epidemiological Parameters
Aggregate multiple <epiparameter> objects into a single `<epiparamet...
Convert <data.frame> to an <epiparameter> object
Convert to an <epiparameter> object
as.data.frame() method for <epiparameter> class
as.data.frame() method for <multi_epiparameter> class
as.function() method for <epiparameter> class
Assert an object is a valid <epiparameter> object
c() method for <epiparameter> class
Calculate the quantiles of a probability distribution based on the vec...
Convert the parameter(s) of a distribution to summary statistics
Convert the summary statistics of a distribution to parameters
Create a citation for an <epiparameter> object
Specify metadata associated with data set
Specify methodological aspects of distribution fitting
Create a distribution object
Specify the geography of the data entry
Specify reported summary statistics
Specify distribution parameter uncertainty
Discretises a continuous distribution in an <epiparameter> object
Calculate the parameters of a probability distribution from a list of ...
Check whether the optimisation of distribution parameters has converge...
Format short citation from <bibentry> object
Standardise distribution parameters
Standardise the variables input by users
Standardise distribution parameter uncertainty
Convert parameters of the gamma distribution to summary statistics
Convert parameter of the geometric distribution to summary statistics
Converts the parameters of the lognormal distribution to summary stati...
Convert parameters of the negative binomial distribution to summary st...
Convert parameters of the Weibull distribution to summary statistics
Convert summary statistics to parameters of the gamma distribution
Convert summary statistics to parameters of the geometric distribution
Convert summary statistics to parameters of the lognormal distribution
Convert summary statistics to parameters of the negative binomial dist...
Convert summary statistics to parameters of the Weibull distribution
Get the underlying distributions names from a <distribution> object ...
Convert <data.frame> from as.data.frame.epiparameter() to `<epipar...
Optimises the parameters for a specified probability distribution give...
Convert a vector of named percentiles into correct format and selects ...
Get the lower and upper percentiles with a preference for symmetrical ...
Check if <data.frame> input is from epireview
Create <epiparameter> object(s) directly from the epiparameter libra...
Create <epiparameter> object(s) directly from the epiparameter libra...
PDF, CDF, PMF, quantiles and random number generation for `<epiparamet...
Package options
epiparameter: Classes and Helper Functions for Working with Epidemiolo...
Create an <epiparameter> object
Calculate the parameters of a parametric probability distribution from...
Function for extracting distribution parameters
Family method for the <epiparameter> class
Format method for <epiparameter> class
Get citation from an <epiparameter> object
Get citation from a list of <epiparameter> objects
Get citation from an object
Get parameters from an <epiparameter> object
Get parameters from an object
Check if distribution in <epiparameter> is continuous
Check if <data.frame> input is from as.data.frame.epiparameter()
Check whether the vector of parameters for the probability distributio...
Check object is an <epiparameter>
Check if <epiparameter> or list of <epiparameter> objects contains...
Check if distribution in <epiparameter> is truncated
lines() method for <epiparameter> class
Mean method for <epiparameter> class
Constructor for <epiparameter> class
Table of epidemiological distributions
Plot method for <epiparameter> class
plot() method for <multi_epiparameter> class
Print method for <epiparameter> class
Print method for <multi_epiparameter> class
Objects exported from other packages
Test whether an object is a valid <epiparameter> object
Classes and helper functions for loading, extracting, converting, manipulating, plotting and aggregating epidemiological parameters for infectious diseases. Epidemiological parameters extracted from the literature are loaded from the 'epiparameterDB' R package.
Useful links