ggPMX1.3.2 package

Give the whole abbreviation definition

Add draft layer annotation

Performs checks of names in shrink list

creates a graphic distribution object

Eta Covariates plots

This creates an ETA covariance matrix which can be used to define the ...

Eta distribution plots

This creates an eta correlation which defines the relationship between...

Try to evaluate a symbol in the parent frame (on error return the symb...

Get abbreviation definition by key

Get category covariates

Get continuous covariates

Get covariates variables

Get controller data set

Get controller occasional covariates

Get the plot config by name

Get plot object

Get extra stratification variables

Get ggPMX Option

ggPMX: A ggplot2 toolbox for Nonlinear Mixed-Effect Model graphical

Remove named elements from gtable

This function can be used to obtain individual prediction and compare ...

Merge input and fingrid data sets

Check if an object is a pmx_gpar class

Merge 2 lists

Obtain the data source config

Load data set

Load all/or some source data set

Determine the number of pages in a paginated facet plot

Creates parameter kable

Parse MONOLIX mlxtran file

Creates pmx controller using monlix data having Occasional variable

Creates pkpd pmx controller using package internal data

Get plot names

Plot EBE distribution

This plots an ETA covariance matrix which can be used to define the co...

Plot random effect correlation plot

This function can be used to plot individual prediction and compare wi...

This function plots EBE versus covariates using qq plots

The ggPMX base plot function

S3 method for plots of class pmx_param_history

This function plot EBE versus covariates using qq plots

This is a generic plot method that produces all plots by default descr...

This function plots residual for each observed value by finding the di...

Plot shrink in eta matric

Get plots description

Creates BLOQ object attributes

Combine tables

Compute Shrinkage

This function can be used to define the pmx configuration used in plot...

Creates a deep copy of the controller

Select/Map covariates using human labels

Creates a density plot object

Creates pmx endpoint object

Generate clean file paths

filter data in a pmx controller

Get List of built-in configurations

Get file extension

Handling pmx Graphical parameters

Index table columns

Test for nm_table_list class

Creates an nm_table_list from manually defined table name patterns

List NONMEM output tables

Generate extension string

Manually define nonmem tables to be imported

Merge firstonly table with full length tables

Message function

Creates pmx controller from an nlimxr fit object

Creates pmx controller from NONMEM model outputs

Parse NONMEM output files

Generic pmx stratified plot

Eta matrix plot

Individual plot

IWRES density plot

SAEM Convergence Plot

VPC plot

Generic pmx plot

Quantile-quantile plots

This function creates a qq plot object

Convert raw strings to tibble

Define data import arguments

Define data import functions

NONMEM output file import function

NONMEM model file parser

NONMEM output table import function

Register plot (Jun2025, Alex: I believe it doesn't work at all)

Gets build-in report templates

Generates ggpmX report from a pre-defined template

Create controller global settings

Create shrinkage parameter object

Create simulation object

Define ggPMX theme

Check tidyr version

Update file extension

Update plot object

Creates vpc bins

Sets vpc confidence interval layer

Sets vpc observation layer

Sets vpc percentile layer

Sets vpc rug layer

Creates vpc object

Create a pmx object

This function can be used to set ggPMX options

S3 print abbreviation

This function can be used to print configuration of the defined object...

Print pmx_gpar object

Print pmxClass object

S3 method print pmxConfig object

Reads .ext files generated by NONMEM

Read Modelling input data

Read MONOLIX individual parameters

Read MONOLIX parameter estimation file

Read MONOLIX model predictions

Read MONOLIX SAEM convergence file

Objects exported from other packages

Scatter residual plots

This function create a residual for each observed value and also gener...

update or add a new abbreviation

Set a controller data set

Create a new plot of the desired type

Method for subsetting "pmx_gpar" objects

Creates pmx controller using theophylline data

merge facets formula with new formula