Interface to the 'g:Profiler' Toolset
Convert SNP rs identifiers to genes.
Map vector of numeric values to Viridis color scale.
Gene ID conversion.
Get the current base URL.
Get the TLS version for SSL
Get current user agent string.
Get version info of g:Profiler data sources
Orthology search.
Gene list functional enrichment.
Manhattan plot of functional enrichment results.
Create and save an annotated Manhattan plot of enrichment results.
Create and save a table with the functional enrichment analysis result...
Generate a random gene list for testing.
Set the base URL.
Set the TLS version to use for SSL
Set custom user agent string.
Upload custom annotations for functional enrichment analysis in g:GOSt...
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.