Fast, Sensitive, and Accurate Integration of Single Cell Data
Set advanced parameters for RunHarmony
Harmony: fast, accurate, and robust single cell integration.
A proxy call to RunHarmony(). Deprecated.
Get beta Utility
Gene expression data of control PBMC from Kang et al. 2017. This conta...
Gene expression data of stimulated PBMC from Kang et al. 2017. This co...
Pipe operator
This is the primary harmony interface.
Generic function that runs the harmony algorithm on single-cell genomi...
Applies harmony on a Seurat object cell embedding.
Applies harmony on PCA cell embeddings of a SingleCellExperiment.
Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.