Benchmarking and Visualization Toolkit for Penalized Cox Models
Construct nomogram ojects for high-dimensional Cox models
Compute Kaplan-Meier estimated survival probabilities for external cal...
Externally calibrate high-dimensional Cox models
Compute Kaplan-Meier estimated survival probabilities for calibration
Calibrate high-dimensional Cox models
Compare high-dimensional Cox models by model calibration
Compare high-dimensional Cox models by model validation
Model selection for high-dimensional Cox models with adaptive elastic-...
Model selection for high-dimensional Cox models with adaptive lasso pe...
Model selection for high-dimensional Cox models with elastic-net penal...
Model selection for high-dimensional Cox models with fused lasso penal...
Model selection for high-dimensional Cox models with lasso penalty
Model selection for high-dimensional Cox models with MCP penalty
Model selection for high-dimensional Cox models with Mnet penalty
Model selection for high-dimensional Cox models with SCAD penalty
Model selection for high-dimensional Cox models with Snet penalty
Breslow baseline hazard estimator for glmnet objects
Compute glmnet predicted survival probabilities for external calibrati...
Compute glmnet predicted survival probabilities for calibration
Survival curve prediction for glmnet objects
Automatic alpha tuning function by k-fold cross-validation
Compute external validation measures for glmnet objects
Compute validation measures for glmnet objects
hdnom: Benchmarking and Visualization Toolkit for Penalized Cox Models
Extract information of selected variables from high-dimensional Cox mo...
Kaplan-Meier Plot with Number at Risk Table
Kaplan-Meier plot with number at risk table for internal calibration a...
Log-rank test for internal calibration and external calibration result...
Breslow baseline hazard estimator for ncvreg objects
Compute ncvreg predicted survival probabilities for external calibrati...
Compute ncvreg predicted survival probabilities for calibration
Survival curve prediction for ncvreg objects
Automatic Mnet/Snet gamma and alpha tuning function by k-fold cross-va...
Automatic MCP/SCAD gamma tuning function by k-fold cross-validation
Compute external validation measures for ncvreg model objects
Compute validation measures for ncvreg model objects
Color Palette for AAAS Journals
Color Palette for Journal of Clinical Oncology (JCO)
Color Palette for Lancet Journals
Color Palette for NPG Journals
Breslow baseline hazard estimator for penfit objects
Compute penfit predicted survival probabilities for external calibrati...
Compute penfit predicted survival probabilities for calibration
Survival curve prediction for penfit objects
Automatic lambda tuning function for fused lasso by k-fold cross-valid...
Compute external validation measures for penfit model objects
Compute validation measures for penfit model objects
Plot external calibration results
Plot calibration results
Plot model comparison by calibration results
Plot model comparison by validation results
Plot nomogram objects
Plot time-dependent discrimination curves for external validation
Plot optimism-corrected time-dependent discrimination curves for valid...
Make predictions from high-dimensional Cox models
Print external calibration results
Print calibration results
Print model comparison by calibration results
Print model comparison by validation results
Print high-dimensional Cox model objects
Print nomograms objects
Print external validation results
Print validation results
Summary of external calibration results
Summary of calibration results
Summary of model comparison by calibration results
Summary of model comparison by validation results
Summary of external validation results
Summary of validation results
Plot theme (ggplot2) for hdnom
Externally validate high-dimensional Cox models with time-dependent AU...
Validate high-dimensional Cox models with time-dependent AUC
Creates nomogram visualizations for penalized Cox regression models, with the support of reproducible survival model building, validation, calibration, and comparison for high-dimensional data.
Useful links