genind2hierfstat function

Converts genind objects from adegenet into a hierfstat data frame

genind2hierfstat(dat,pop=NULL)

Arguments

• dat: a genind object
• pop: a vector containing the population to which each individual belongs. If pop=NULL, pop taken from slot pop of the genind object

Returns

a data frame with nloci+1 columns and ninds rows. The first column contains the population identifier, the following the genotypes at each locus

Examples

## Not run:

library(adegenet)
data(nancycats)
genind2hierfstat(nancycats)
basic.stats(nancycats)
genet.dist(nancycats)
data(H3N2)
basic.stats(genind2hierfstat(H3N2,pop=rep(1,dim(H3N2@tab)[1])),diploid=FALSE)
## End(Not run)