Compute, Handle, Plot and Model Incidence of Dated Events
Compute cumulative 'incidence'
Access various elements of an incidence object
Bootstrap incidence time series
Conversion of incidence objects
Estimate the peak date of an incidence curve using bootstrap
Find the peak date of an incidence curve
Fit exponential models to incidence data
Get counts from an incidence object
Retrieve dates from an incidence object
Subsetting 'incidence' objects
Accessors for incidence_fit objects
extract and set group names
Compute incidence of events from a vector of dates.
Color palettes used in incidence
Plot function for incidence objects
Pool 'incidence' across groups
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Useful links