joineRML0.4.6 package

Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes

baseHaz

The baseline hazard estimate of an mjoint object

bootSE

Standard errors via bootstrap for an mjoint object

confint.mjoint

Confidence intervals for model parameters of an mjoint object

dynLong

Dynamic predictions for the longitudinal data sub-model

dynSurv

Dynamic predictions for the time-to-event data sub-model

fitted.mjoint

Extract mjoint fitted values

mjoint.object

Fitted mjoint object

mjoint

Fit a joint model to time-to-event data and multivariate longitudinal ...

mjoint_tidiers

Tidying methods for joint models for time-to-event data and multivaria...

summary.mjoint

Summary of an mjoint object

fixef.mjoint

Extract fixed effects estimates from an mjoint object

formula.mjoint

Extract model formulae from an mjoint object

getVarCov.mjoint

Extract variance-covariance matrix of random effects from an mjointo...

joineRML

joineRML

logLik.mjoint

Extract log-likelihood from an mjoint object

plot.dynLong

Plot a dynLong object

plot.dynSurv

Plot a dynSurv object

plot.mjoint

Plot diagnostics from an mjoint object

plot.ranef.mjoint

Plot a ranef.mjoint object

plotConvergence

Plot convergence time series for parameter vectors from an mjointobj...

ranef.mjoint

Extract random effects estimates from an mjoint object

reexports

Objects exported from other packages

residuals.mjoint

Extract mjoint residuals

sampleData

Sample from an mjoint object

sigma.mjoint

Extract residual standard deviation(s) from an mjoint object

simData

Simulate data from a joint model

vcov.mjoint

Extract an approximate variance-covariance matrix of estimated paramet...

Fits the joint model proposed by Henderson and colleagues (2000) <doi:10.1093/biostatistics/1.4.465>, but extended to the case of multiple continuous longitudinal measures. The time-to-event data is modelled using a Cox proportional hazards regression model with time-varying covariates. The multiple longitudinal outcomes are modelled using a multivariate version of the Laird and Ware linear mixed model. The association is captured by a multivariate latent Gaussian process. The model is estimated using a Monte Carlo Expectation Maximization algorithm. This project was funded by the Medical Research Council (Grant number MR/M013227/1).

  • Maintainer: Graeme L. Hickey
  • License: GPL-3 | file LICENSE
  • Last published: 2023-01-20