lcc1.1.4 package

Longitudinal Concordance Correlation

AIC.lcc

Akaike and Bayesian Information Criteria for an lcc Object.

anova.lcc

Compare Likelihoods of Fitted Models from an lccObject

bootstrapSamples

Internal functions to estimate fixed effects and variance components.

CCC

Internal Function to Compute the Sampled Concordance Correlation Value...

CCC_lin

Internal Function to Estimate the Sampled Concordance Correlation Coef...

ciBuilder

Internal Function to Prepare the ciCompute Function.

ciCompute

Internal Function to Compute the Non-Parametric Bootstrap Interval.

coef.lcc

Extract Model Coefficients

dataBootstrap

Internal Functions to Generate Bootstrap Samples Based on Dataset.

dataBuilder

Internal Function to Prepare the Dataset for lccObjects

fitted.lcc

Extract lcc Fitted Values

fittedBuilder

Internal Function to Build Fitted Values for lcc Objects

getDelta

Internal Function to Extract Variance Components Estimates.

getVarCov.lcc

Extract Variance Components from a Fitted Model

init

Internal Function to Prepare lccModelFunction

is.lcc

Reports whether x is a lcc object

laBootstrap

Internal functions to generate longitudinal accuracy samples.

laBuilder

Internal Function to Estimate the Longitudinal Accuracy.

laWrapper

Internal Function to Prepare the laBuilder Function

lcc

Longitudinal Concordance Correlation (LCC) Estimated by Fixed Effects ...

lcc_intervals

Internal Functions to Compute the Non-Parametric Confidence Intervals ...

lccBootstrap

Internal functions to generate longitudinal concordance correlation sa...

lccBuilder

Internal Function to Estimate the Longitudinal Concordance Correlation...

lccInternal

Internal Function to Prepare lcc Objects

lccModel

Internal Function to Fits a Linear Mixed-Effects Model in the Formulat...

lccPlot

Plot Fitted Curves from an lcc Object.

lccSummary

Internal Function to Summarize Fitted and Sampled Values for lcc Obj...

lccWrapper

Internal Function to Prepare the lccBuilderFunction

logLik.lcc

Extract Log-Likelihood of an lcc Object

lpcBootstrap

Internal functions to generate longitudinal Pearson correlation sample...

lpcBuilder

Internal Function to Estimate the Longitudinal Pearson Correlation.

lpcWrapper

Internal Function to Prepare the lpcBuilderFunction

Pearson

Internal Function to Estimate the Sampled Pearson Correlation.

plot.lcc

Diagnostic Plots of an lcc Object.

plot_la

Internal Function to Prepare the plotBuilder_laFunction.

plot_lcc

Internal function to prepare the plotBuilder_lccfunction.

plot_lpc

Internal function to prepare the plotBuilder_lpc function.

plotBuilder_la

Internal Function to Produces a Longitudinal Accuracy Plot.

plotBuilder_lcc

Internal Function to Produces a Longitudinal Concordance Correlation P...

plotBuilder_lpc

Internal Function to Produces a Longitudinal Perason Correlation Plot.

plotControl

Specifying Graphical Control Values for lcc Class

print.anova.lcc

Print the Anova of an lcc Object

print.lcc

Print an lcc Object

print.summary.lcc

Print the Summary of an lcc Object

ranef.lcc

Extract Model Random Effects

rename.vars

Internal Function to Prepare lccModelFunction

residuals.lcc

Extract Model Residuals

summary.lcc

Summarize an lcc Object

time_lcc

Regular Sequence for the Time Variable

vcov.lcc

Extract Variance-Covariance Matrix of the Fixed Effects

Estimates the longitudinal concordance correlation to access the longitudinal agreement profile. The estimation approach implemented is variance components approach based on polynomial mixed effects regression model, as proposed by Oliveira, Hinde and Zocchi (2018) <doi:10.1007/s13253-018-0321-1>. In addition, non-parametric confidence intervals were implemented using percentile method or normal-approximation based on Fisher Z-transformation.

  • Maintainer: Thiago de Paula Oliveira
  • License: GPL (>= 2)
  • Last published: 2022-08-25