Tools for Generating, Visualizing, and Analysing Link Communities in Networks
Correlation of Community Centrality with Classic Centrality
Extract Meta-Communities
Find and Remove Edge Loops and Duplicates
Find Node Overlaps between Communities
Get Nodes Shared by Communities
Find Nested Communities
Hierarchichal Clustering of Link Communities
Calculate Community Centrality Measures for Nodes
Calculate Community Connectedness or Modularity
Construct a Community Membership Matrix
Extract Edge Indices from Communities
Extract Link Communities from a Network
Find Nested Structures in Communities
Extract Nodes from Communities
Generate Overlapping Cluster Generator (OCG) Communities
Make Node or Edge Graph Features
Sample Human Protein Interactome
Convert A Network to an Integer Edgelist
Social Network in a Karate Club
Calculate Node Coordinates for a Spencer Circle
Co-Appearance Network from Les Miserables
The linkcomm package
Write a Partition File for Clust&See
Write an Edge Attribute File for Cytoscape
Calculate Link Community Link Densities
Produce a Set of Meta-Communities
User-Defined Link Communities
Extract Node Community Membership by Edges
Order Link Communities According to the Dendrogram
The linkcomm Plotting Function
The OCG Plotting Function
Plot a Coloured Dendrogram of Link Communities
Plot a Graph Layout of Link Communities
Plot a Community Membership Matrix for Link Communities
Plot a Summary of the Link Community Algorithm Output
Plot a Summary of the Link Communities
Plot a Graph Layout of OCG Communities
Sample Yeast Protein Interactome
Print a Summary of a linkcomm Object
Print a Summary of an OCG Object
Read an OCG Partition File into R
Sample Gene Co-Expression Network
Extract Community Membership for Nodes
Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities. Kalinka and Tomancak (2011) <doi:10.1093/bioinformatics/btr311>.