get.community.overlaps function

Find Node Overlaps between Communities

This function returns lists of communities that share at least one node with each other.

get.community.overlaps(x)

Arguments

• x: An object of class linkcomm or OCG.

Returns

A list of length equal to the number of communities. Each element contains an integer vector giving the community IDs for communities sharing at least one node with each community. NAs indicate that a community shares no nodes with any other communities.

References

Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27 , 2011-2012.

Author(s)

Alex T. Kalinka alex.t.kalinka@gmail.com

Examples

## Generate graph and extract link communities.
g <- swiss[,3:4]
lc <- getLinkCommunities(g)

## Get list of overlapping communities.
ov <- get.community.overlaps(lc)