cjs_gamma function

HMM Transition matrix functions

Functions that compute the transition matrix for various models. Currently only CJS and MS models are included.

cjs_gamma(pars, m, F, T)

Arguments

• pars: list of real parameter values for each type of parameter
• m: number of states
• F: initial occasion vector
• T: number of occasions

Returns

array of id and occasion-specific transition matrices - Gamma in Zucchini and MacDonald (2009)

References

Zucchini, W. and I.L. MacDonald. 2009. Hidden Markov Models for Time Series: An Introduction using R. Chapman and Hall, Boca Raton, FL. 275p.

Author(s)

Jeff Laake