metamisc0.4.0 package

Meta-Analysis of Diagnosis and Prognosis Research Studies

gen

Generalizability estimates

impute_conditional_mean

Impute missing values by their conditional mean

inv.logit

Apply the inverse logit tranformation

logit

Apply logit tranformation

logLik.riley

Print the log-likelihood

ma

Random effects meta-analysis

metamisc-package

Meta-Analysis of Diagnosis and Prognosis Research Studies

metapred

Generalized Stepwise Regression for Prediction Models in Clustered Dat...

oecalc

Calculate the total O:E ratio

perf

Performance estimates

plot.fat

Display results from the funnel plot asymmetry test

plot.mm_perf

Forest Plots

plot.riley

Plot the summary of the bivariate model from Riley et al. (2008).

plot.uvmeta

Forest Plots

acplot.mcmc.list

Plot the autocorrelation of a Bayesian meta-analysis model

acplot

Plot the autocorrelation of a Bayesian meta-analysis model

acplot.uvmeta

Plot the autocorrelation of a Bayesian meta-analysis model

acplot.valmeta

Plot the autocorrelation of a Bayesian meta-analysis model

ccalc

Calculate the concordance statistic

cor2cov

Convert a correlation matrix into a covariance matrix

dplot.mcmc.list

Posterior distribution of estimated model parameters

dplot

Posterior distribution of estimated model parameters

dplot.uvmeta

Plot the prior and posterior distribution of a meta-analysis model

dplot.valmeta

Plot the prior and posterior distribution of a meta-analysis model

fat

Regression tests for detecting funnel plot asymmetry

fitted.metapred

Extract Model Fitted Values

forest.default

Forest plot

forest.metapred

Forest plot of a metapred fit

forest.mp.cv.val

Forest plot of a validation object.

forest

Forest plot

gelmanplot.mcmc.list

Gelman-Rubin-Brooks plot

gelmanplot

Gelman-Rubin-Brooks plot

gelmanplot.uvmeta

Gelman-Rubin-Brooks plot

gelmanplot.valmeta

Gelman-Rubin-Brooks plot

plot.valmeta

Forest Plots

predict.riley

Prediction Interval

recalibrate

Recalibrate a Prediction Model

riley

Fit the alternative model for bivariate random-effects meta-analysis

rmplot.mcmc.list

Plot the running means of a Bayesian meta-analysis model

rmplot

Plot the running means of a Bayesian meta-analysis model

rmplot.uvmeta

Plot the running means of a Bayesian meta-analysis model

rmplot.valmeta

Plot the running means of a Bayesian meta-analysis model

se

Standard errors and variances

stackedglm

Stacked Regression

subset.metapred

Subsetting metapred fits

summary.riley

Parameter summaries Provides the summary estimates of the alternative ...

summary.uvmeta

Summarizing Univariate Meta-Analysis Models

uvmeta-class

Class "uvmeta". Result of a univariate meta-analysis.

uvmeta

Univariate meta-analysis

valmeta

Meta-analysis of prediction model performance

vcov.riley

Calculate Variance-Covariance Matrix for a Fitted Riley Model Object

Facilitate frequentist and Bayesian meta-analysis of diagnosis and prognosis research studies. It includes functions to summarize multiple estimates of prediction model discrimination and calibration performance (Debray et al., 2019) <doi:10.1177/0962280218785504>. It also includes functions to evaluate funnel plot asymmetry (Debray et al., 2018) <doi:10.1002/jrsm.1266>. Finally, the package provides functions for developing multivariable prediction models from datasets with clustering (de Jong et al., 2021) <doi:10.1002/sim.8981>.