mhsmm0.4.21 package

Inference for Hidden Markov and Semi-Markov Models

addStates

Adds a bar representing state sequence.

dmvnorm.hsmm

Emission ensity function for a multivariate normal emission distributi...

dnorm.hsmm

Emission density function for normal emission distribution

dpois.hsmm

Emission density function for Poisson emission distribution

gammafit

Parameter estimation for the Gamma distribution

hmmfit

fit a hidden Markov model

hmmspec

Specificatin of HMMs

hsmmfit

fit a hidden semi-Markov model

hsmmspec

Hidden semi-Markov model specification

mstep.mvnorm

Performs re-estimation (the M-step) for a multivariate normal emission...

mstep.norm

Performs re-estimation (the M-step) for a normal emission distribution

mstep.pois

Performs re-estimation (the M-step) for a Poisson emission distributio...

plot.hsmm.data

Plot function for hsmm data

plot.hsmm

Plot function for hsmms

predict.hmm

Prediction function for hmm

predict.hmmspec

Prediction function for hmmspec

predict.hsmm

Prediction for hsmms

predict.hsmmspec

Prediction for hsmmspec

print.hmm

Print method for hmm objects

print.hmmspec

Print function for hmmspec

print.hsmmspec

Print function for hsmmspec

reproppa.rd

Observed lengths of post-partum anoestrus for 73 dairy cows

rmvnorm.hsmm

Random number generation from a multivariate normal distributed emissi...

rnorm.hsmm

Random number generation from a normally distributed emission distribu...

rpois.hsmm

Random number generation from a Poisson distributed emission distribut...

sim.mc

Markov chain simulation

simulate.hmmspec

Simulation of hidden Markov models

simulate.hsmmspec

Simulation for HSMMs

smooth.discrete

Smoothing a discrete time series.

summary.hmm

Summary method for hmm objects

summary.hsmm

Summary function for hsmm

Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences. Suitable for equidistant time series data, with multivariate and/or missing data. Allows user defined emission distributions.

  • Maintainer: Jared O'Connell
  • License: GPL (>= 2)
  • Last published: 2023-08-23