(Non)Additive Genetic Relatedness Matrices
Creates the (additive) mutational effects relationship matrix
Create the inverse (additive) mutational effects relationship matrix
Creates the additive genetic relationship matrix for the shared sex ch...
Creates components of the additive genetic relationship matrix and its...
Deprecated functions in package nadiv
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Akaike Information Criterion
Confidence Intervals for Variance Components
Sampling (co)variances
Fix a Model Parameter and Conduct Likelihood Ratio Test
Simulated design random effects
Finds the double first cousins in a pedigree
Identifies the matriline or patriline to which each individual in a pe...
Generation assignment
Functions to conduct gene dropping through a pedigree
Genetic group contribution
Simulated genetic random effects
log-Likelihood Ratio Test
Creates the additive genetic relationship matrix
Creates the additive by additive epistatic genetic relationship matrix
Creates the inverse additive genetic relationship matrix
Creates the inverse additive genetic relationship matrix with genetic ...
Create the dominance genetic relationship matrix
Creates the additive by dominance and dominance by dominance epistatic...
Create the dominance genetic relationship matrix through an iterative ...
(Non)Additive Genetic Relatedness Matrices in Animal Model Analyses
Integer Format Pedigree
REML convergence checks
Approximate standard errors for linear functions of variance component...
Prepares a pedigree by sorting and adding 'founders'
Prunes a pedigree based on individuals with phenotypes
Genetic group pedigree and data simulation
Double first cousin pedigree construction
Half-sib pedigree construction
Middle Class Neighborhood pedigree construction
Converts a sparse matrix into a three column format.
Transforms ASReml-R gamma sampling variances to component scale
Constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model'). Also includes other functions to facilitate the use of animal models. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml>).