Compares the Distribution of Sister Clades Through a Phylogeny
Identify nodes in a phylogeny
Add a shapefile to a nodiv data object
Site statistics of nodiv data objects
Species statistics of nodiv data objects
Data objects for node-based analysis
Apply a grid (2D bins) to nodiv objects of type 'points'
Calculate GND and SOS scores for a phylogeny and community data set
Attributes of individual clades
Compare the distributions of a pair of sister clades
nodiv - Node-based analysis of species distributions
Basic attributes of distrib_data objects
Access functions to the community matrix of distrib_data objects
Plot Phylogenies
Plot a phylogeny with colored node labels
Plot a variable on spatial points or a spatial grid using a color scal...
Plot a richness map for an object of type distrib_data, nodiv_data or ...
Gives the SOS values for a given node.
Subsampling data objects to certain species or sites
Plot the relative amounts of two variables using a purple-green color ...
Update distrib_data objects to the nodiv version >= 1.1 format
An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. <DOI:10.1111/2041-210X.12283>. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped.