ogrdbstats0.5.4 package

Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

generate_ogrdb_report

Generate OGRDB reports from specified files.

genotype_statistics_cmd

Collect parameters from the command line and use them to create a repo...

make_barplot_grobs

Create a barplot for each allele, showing number of reads distributed ...

make_haplo_grobs

Create haplotyping plots

make_novel_base_grobs

Create plots showing base usage at selected locations in sequences bas...

read_input_files

Read input files into memory

write_genotype_file

Write the genotype file required by OGRDB

write_plot_file

Create the OGRDB style plot file

Download source packageRead PDF manual

Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.

  • Maintainer: William Lees
  • License: CC BY-SA 4.0
  • Last published: 2025-07-07

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