omu1.1.2 package

Assign hierarchy metadata

Check data for zeros across samples within factor levels. Will determi...

Get counts for significant fold changes by metabolite class.

Get nucleotide and amino acid sequences for genes

Gather metadata from KEGG for metabolites

Get metadata from KEGG API

Perform anova

omu_summary Performs comparison of means between two independent varia...

Create a PCA plot

Create a pie chart

plate_omelette Internal method for KEGG_Gather which parses flat text ...

Clean up orthology metadata

Create a bar plot

Create a box plot

Create a heatmap

plot_rf_PCA

plot_variable_importance

Create a volcano plot

Creates a ratio table from the count_fold_changes function output.

random_forest Perform a classification or regression random forest mod...

Import a metabolomics count data frame

transform_metabolites

transform_samples