Calculating Ontological Similarities
Create similarity index for list of term sets
Get information content based on number of descendants each term has
Get asymmetrical similarity matrix
Get similarities of term sets to profile
Get similarity matrix of pairwise similarities of term sets.
Get similarity p-value for subgroup term sets
Get similarity p-value
Calculate the group similarity of a set of row/column indices
Get matrix of similarity rank from similarity matrix
Get `term sets to term' similarity matrix
Get term-term similarity matrix
Identify enriched terms in subgroup
Calculate Lin similarity score of two term sets
Functions for Calculating Ontological Similarities
Calculate Resnik similarity score of two term sets
Draw sample of group similarities
Draw sample of group similarities
Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.