pcvr1.3.1 package

subset helper function for use reading in large data, called in pcv.su...

Function to help fulfill elements of the Bayesian Analysis Reporting G...

Function to visualize brms models similar to those made using growthSS...

Function to visualize brms survival models specified using growthSS.

Function to visualize hypotheses tested on brms models similar to thos...

Remove outliers from bellwether data using cook's distance

Time conversion and plotting for bellwether data

Read in lemnatech watering data from metadata.json files

Helper function to check groups in data.

Combine Draws From brms Models

Class conjugate for output from the pcvr::conjugate function.

Bayesian testing using conjugate priors and method of moments for sing...

Reduce phenotypes in longitudinal data to cumulative sums of phenotype...

Function for plotting iterations of posterior distributions

Ease of use wrapper function for fitting various growth models specifi...

Ease of use brms wrapper function for fitting growth models specified ...

Ease of use wrapper function for fitting growth models specified by `g...

Ease of use lm wrapper function for fitting growth models specified by...

Ease of use mgcv wrapper function for fitting gams specified by `growt...

Ease of use nlme wrapper function for fitting growth models specified ...

Ease of use lme wrapper function for fitting gams specified by `growth...

Ease of use nlrq wrapper function for fitting growth models specified ...

Ease of use rq wrapper function for fitting gams specified by `growthS...

Ease of use nls wrapper function for fitting growth models specified b...

Ease of use lm wrapper function for fitting gams specified by `growthS...

Ease of use rq wrapper function for fitting models specified by mvSS

Ease of use wrapper function for fitting growth models specified by `g...

Function to visualize flexsurv::flexsurvreg models fit by `fitGrowth...

Variance partitioning using Full Random Effects Models

Helper function for visualizing differences in GAMs fit with `mgcv::ga...

Function to visualize models made by fitGrowth .

Growth data simulating function

Ease of use growth model helper function.

Multi Value Trait Aggregation function

Multi Value Trait simulating function

Ease of use multi-value trait model helper function.

Visualizing igraph networks

Function to visualize common nlme::nlme growth models.

Function to visualize common quantreg::nlrq growth models.

Function to visualize common stats::nls growth models.

Function to run a PCA, plot and optionally return the data with PCA co...

Default theme for ggplots made by pcvr functions.

Earth Mover's Distance between spectral histograms

Make Joyplots for multi value trait plantCV data

Network analysis of a distance matrix

Run Partial Least Squares Regression on spectral data

Class pcvrss for models specified in pcvr.

Plot a conjugate object.

Check priors used in ease of use brms functions

Plot Variable Influence on Projection

Print a conjugate object.

Print a conjugatesummary object.

Print a pcvrss object.

Print a pcvrsssummary object.

Calculate pseudo water use efficiency from phenotype and watering data

Read in plantCV csv from bellwether phenotyper style experiments analy...

Read in plantCV csv output in wide or long format

Calculate relative tolerance of some phenotype(s) relative to control

Function to visualize quantreg::rq general additive growth models.

Summarize a conjugate object.

Summarize a pcvrss object.

Function to visualize survival::survreg models fit by fitGrowth.

Hypothesis testing for fitGrowth models.