Parallelised Estimation of Prediction Error
Determine the Brier score for a fitted model
Determine the missclassification rate for a fitted model
Determine the prediction error curve for a fitted model
Interface for selection of optimal parameter for lasso fit
Extract functions, libraries and global variables to be loaded onto a ...
Interface function for fitting a Cox proportional hazards model
Interface function for fitting a generalised linear model with the las...
Integrated prediction error curve
Parallelised Estimation of Prediction Error
Prediction error estimates
Predictive partial log-likelihood for Cox poportional hazards model
Generic function for extracting the predictive partial log-likelihood
Plot method for peperr object
Calculate prediction error curves
Extract predicted survival probabilities from a coxph object
Generic function for extracting predicted survival probabilities
Extract predicted survival probabilities from a survfit object
Generation of indices for resampling Procedure
Designed for prediction error estimation through resampling techniques, possibly accelerated by parallel execution on a compute cluster. Newly developed model fitting routines can be easily incorporated. Methods used in the package are detailed in Porzelius Ch., Binder H. and Schumacher M. (2009) <doi:10.1093/bioinformatics/btp062> and were used, for instance, in Porzelius Ch., Schumacher M.and Binder H. (2011) <doi:10.1007/s00180-011-0236-6>.
Useful links