simAutoCross function

S3 class simAutoCross

An S3 class which contains simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating given parents with 01 , 10 and 11 markers

Returns

• markers: matrix of 0,1 dominant markers with individuals as cols and rows as markers

• true.dosage: true doses for each marker

• name.true.dose: names of true doses for each marker

• p10: object of class simAutoMarkers for parental type 10

• p01: object of class simAutoMarkers for parental type 01

• p11: object of class simAutoMarkers for parental type 11

• ploidy.level: the number of homologous chromosomes as numeric (single value)

• prop.par.type: proportion of markers for each parental type p01 , p10 and p11

• n.markers: number of markers (Default: 500)

• n.individuals: number of individuals in the cross (Default: 200)

• dose.proportion: proportion in each dose -- if numeric vector is the same for p01 , p10 and p11 else a list with components sQuotep01, p10 and p11

• no.dosage.classes: number in each dosage class

• no.parType: number in each parental type

• time.generated: time/date when data set generated

• seed: seed for random number generator seed which could be used to reproduce results (I hope)

• call: matches arguments when function called

Author(s)

Peter Baker p.baker1@uq.edu.au

See Also

sim.autoCross,simAutoMarkers, sim.autoMarkers