pubmed.mineR1.0.21 package

Class "Abstracts" Abstract Class

To extract sentences with nultiple keywords from Abstracts

To extract sentences containing Alias of the Human Genes from Pubmed a...

To Get Alternative names of Genes

To obtain the Buzz Word Index of terms from the Abstracts.

Methods for Function cleanabs

To clean the result of searchabsL

To Find the highest frequency of words within clusters

Extracts multiple sentence with co-occurrence of two sets of terms)

Extracts sentences with co-occurrence of two sets of terms

Abstracts Method to Combine Abstracts

To combine the abstracts

Method for Context Search

For Context Search

Cosine Similarity Calculation by Boot Strapping

To calculate the cosine similarity between terms.

To Retrive the Abstracts for year.

To find the conclusion from the abstract(s).

To find the introduction and conclusion from the abstracts.

To Extract Genes from the Abstracts

Function to obtain the Buzz Word Index of Genes from the abstracts.

method to find the abstracts for the given gene.

To Search the number of abstracts for Genes

function for extracting Digital Object Identifier (DOIs) of papers

To extract the sentences for genes from the corpus.

To Get MedLinePlus Summary

To extract NM ids from NCBI.

To get the original terms from the corpus. deprecated

To get the original terms from the corpus.

To extract the PMC Ids of the abstracts.

To fetch the given PMC article tables. Deprecated

To extract the Gene sequence from the NCBI.

getabs To Get abstracts for a term

To get Abstracts for a given term.

To Get Abstracts

To get Abstracts for a given term.

To fetch the sentence from the PMC full text article

To extract sentences from the Abstracts

To extract the abbreviated term.

HGNC Class for package.

fetch the abstracts using E-utilities.

To Get Information from Uniprot.

To extract the sentences in asbtracts containing gene names from HGNC.

To read the abstracts from the PubMed saved in XML format.

To extract the sentences containing official gene symbol from abstract...

To Find and match the PMIDs to the abstracts.

To Retrieve the Abstracts from the large corpus for given years.

To extract the sentences containing Previous symbols of HGNC genes.

To prind the total number of abstracts in an S4 object of class Abstra...

function for text annotation using PubTator

function for text annotation using PubTator.Deprecated.

Function to Convert Pubtator result from list into Table

function for text annotation using PubTator

To read Abstracts

To read Abstracts

To Initiate the Classes.

removeabs To remove abstracts of a term from the data.

To remove abstracts for the query term.

Searching Abstracts

To Search the abstracts of term(s) in a combination mode.

searchabsT Searching abstracts

To Search Abstracts

To send the Data into a File

To send abstracts

To Tokenize the sentences

Removes extra spaces between words.

Getting subabstracts

To find sub-abstracts

To make subset of Abstracts.

To make subsets of large corpus.

create Term Document Matrix for lsa analysis

To get information about gene from the UniProt.Deprecated.

To fetch the cluster for words

Extracts the words associated (to the left and to the right) with a gi...

Atomization of words

To cluster the words

To view the words in cluster

Gene atomization of xml abstracts.

Gene atomization of xml abstracts.Deprecated.

To read the abstracts from the PubMed saved in XML format.

Word atomizations of abstracts from xml format.

Yearwise Year wise extraction of Abstracts

To Search abstracts Year wise