Ready-to-Use Omics Formatting, Analysis, and Visualization Pipeline
Append feature names to a dana object
Add taxonomic information to dana object
Adjust P-values in a dana object
Build phyloseq objects for all taxonomy ranks
Differential analysis (dana)
Multivariate analysis (PCA, PLS, OPLS)
PERMANOVA with flexible permutation control
Process MS-like omics data
Process next generation sequencing data
Generate plots from a differential analysis (dana) object
Provides a flexible and streamlined pipeline for formatting, analyzing, and visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics, metabolomics). The package includes tools for shaping input data into analysis-ready structures, fitting linear or mixed-effect models, extracting key contrasts, and generating a rich variety of ready-to-use publication-quality plots. Designed for transparency and reproducibility across a wide range of study designs, with customizable components for statistical modeling.
Useful links