stacomiR0.6.1 package

barplot method for object report_annual-class

Calcule method for report_ge_weight

Transforms migration per period to daily migrations, and performs the ...

Computes data to a standard format for the summary and plot methods.

Calculations for migration in the class report_mig_env-class

calcule method for report_mig_interannual

#' Transforms migration per period to daily migrations, and performs t...

Calculation for report_sample_char

Split data according to the limits set in the limit1hm, and limit2hm a...

Calculate individual silver eel parameters.

calcule method for report_species

Generic method for calculations

Loading method for Refchoice referential objects

loads the coefficients for the period defined in class

Method to load the counting devices of the control station

Loading method for DF referential objects

Loading method for ref_env referential object

Loading method for ref_list referential objects

Loading method for ref_par referential objects

Loading method for Reparqual referential objects

Loading method for Reparquan referential objects

Loading method for ref_stage referential objects

Loading method for ref_taxa referential objects

Loading method for ref_textbox referential objects

Loading method for ref_year referential objects

charge method for report_annual class

charge method for report_dc

charge method for report_df

charge method for report_env class

Loads additional data on migration control operations, df (fishway) dc...

charge method for report_mig_char

charge method for report_mig_env class

loading method for report_mig_interannual class

charge method for report_mig_mult

charge method for report_ope

charge method for report_sample_char class

Loads data and check that all choices in the graphical interface have ...

charge method for report_silver_eel class

charge method for report_species

Generic method to load referentials

Loads an additional dataset this method is loaded to obtain the possib...

Generic method to load additional data

Loading method for ref_par referential objects searching only those ...

Loading method for Reparqual referential objects searching only those ...

Loading method for Reparquan referential objects searching only those ...

Loading method for ref_stage referential objects searching only those ...

Loading method for ref_taxa referential objects searching only taxa ex...

Generic method to load referentials, with filters from the parent obje...

Choice_c method for ref_choice referential objects

Command line interface to select a counting device

Command line interface to choose a fishway

Command line interface to select a monitoring station

Choice_c method for ref_horodate

Choice_c method for ref_list referential objects

Command line interface to select a parameter

choice_c method for ref_stage

choice_c method for ref_taxa

Choice_c method for ref_textbox referential objects

choice_c method for class ref_timestep_daily

choice_c method for ref_year referential from the command line

command line interface for report_annual-class

command line interface for report_dc class

command line interface for report_df class

command line interface for report_env class

command line interface for report_ge_weight-class

command line interface for report_mig class

command line interface for report_mig_char class

command line interface for report_env class

command line interface for report_mig_interannual class

command line used to build report_mig_mult class

command line interface for report_sample_char class

command line interface for report_sea_age class

command line interface for report_silver_eel class

command line interface for report_species-class

Generic method for manual choice using the command line

Builds a table with colors to merge with a dataframe for later use in ...

connect method for report_annual class this method performs the sum ov...

connect method for report_dc

connect method for report_df

connect method for report_env class

connect method for report_Poids_moyen

connect method for report_mig

connect method for report_mig_char

connect method for report_mig_env class

connect method for report_mig_interannual

connect method for report_mig_mult

connect method for report_ope

connect method for report_sample_char

connect method for report_sea_age

connect method for report_silver_eel

connect method for report_species

Gets the final horodate for an object of class ref_timestep-class

Generic method for getting the final date

Environment where most objects from the package are stored and then lo...

Get table content for table t_bilanmigrationjournalier_bjo in report_m...

Calculates a data.frame where all components within the list calcdata ...

function used to remove special non utf8 character which cause the gtk...

This function extracts temporal characteristics from a dataframe

statistics per time period

Calculate daily migration by simple repartition

Function to calculate daily migration using overlaps functions

Creates a list of available schemas in the db

Function to calculate the stages from Durif

functions called in DF and DC

returns a table where weights and number are calculated from number an...

This writes monthly data in t_reportmensuel_mens table

Internal use barchart for report_df class from the graphical interface

Internal use, function used in the graphical interface to create a bar...

Internal use, rectangles to describe the DF work for report_df class,

Function to plot calendar like graph, internal use

Function for report_mig graphs including numbers DF DC operations

Graph function for glass eel migration. Differs from fungraph as it do...

this function displays text and will be used to convey stacomiR messag...

funplotreport_silver_eel

Function to calculate statistics per month

function to print and save statistics in .csv and .html formats for re...

Table output for report_df class

this function gets the name of the stucture as it is set in the databa...

this function gets the schema from envir stacomi and throws warning

Gets the year or a vector of years corresponding to the timestep ("ref...

Generic method to get the years

Generic method getvalue

function used for some lattice graphs with dates

Internal function, tests the connection and if it works loads the stac...

model method for report_ge_weight' this method uses samples collected ...

Generic for prediction

Plot method for report_annual

Different plots for report_dc

Different plots for report_df

Plot method for report_env

Plot method for report_ge_weight'

Plots of various type for report_mig.

plot method for report_mig_char

Plot method for report_mig_env

Plot method for report_mig_interannual

Plots of various type for report_mig_mult

Plots of various type for reportcarlot

Plots of various type for report_sea_age

Plots of various type for report_silver_eel

Plot method for report_species

Method to print the command line of the object.

Method to print the command line of the object

Method to print the command line of the object

Method to print the command line of the object

Method to print the command line of the object

Method to print the command line of the object

Method to print the command line of the object

Class 'ref_choice'

Class 'ref_coe'

Class 'ref_dc'

Class 'ref_df'

Class 'ref_env'

Class ref_horodate

Class 'ref_list'

Class 'ref_par'

Class 'ref_parqual'

Class 'ref_parquan'

Class 'ref_stage'

Class 'ref_taxa'

ref_textbox referencial class

Class "ref_timestep"

Class 'ref_timestep_daily'

Class "ref_timestepChar"

Year reference class

Class "report_annual"

Class "report_dc" report du fonctionnement du dispositif de comptage

Report on fishway operation

class report_env simple output of one or several environmental conditi...

Trend of wet weight in glass eel

Migration report for one DC, one species and one stage

Migration report along with quantitative and qualitative characteristi...

Class "report_mig_env"

Class "report_mig_interannual"

Migration reports for multiple DC / species / stages

Report on operations

Class 'report_sample_char'

Class "report_sea_age"

Class "report_silver_eel"

Counts of number per taxa/stages

Turns a continuous parameter into discrete values

Generic method to transform quantitative par into a qualitative one

Create a dataframe suitable for charts per 24h and day

stacomi Main launcher for program stacomi

summary for report_dc, write csv and html output, and prints summary s...

summary for report_df, write csv and html output, and prints summary s...

summary for report_mig calls functions funstat and funtable to create ...

summary for report_mig_char

summary for report_mig_interannual provides summary statistics for the...

summary for report_mig_mult calls functions funstat and funtable to cr...

summary for report_sample_char

summary for report_sea_age

summary for report_silver_eel

summary for report_species

supprime method for 'ref_coe' class

supprime method for report_mig_interannual class, deletes values in ta...

supprime method for report_mig_interannual class

Generic method to delete entires from the database

Validity check for ref_horodate

Validity check for ref_year

Transforms a vector into a string called within an sql command e.g. c(...

Method to write data to the stacomi database for report_ge_weight-clas...

Command line method to write the daily and monthly counts to the t_bil...

Command line method to write the characteristic "sea age" (car_par_cod...

Generic method write_database

xtable function for report_annual-classcreate an xtable objet but also...

xtable function for report_mig_char-classcreate an xtable objet to be ...