tidysdm1.0.4 package

Add best member of workflow to a simple ensemble

Add repeat(s) to a repeated ensemble

Plot the results of a simple ensemble

Create a ggplot for a spatial initial rsplit.

Convert an object created with blockCV to an rsample object

Boyce continuous index (BCI)

Calibrate class thresholds

Check that we have a valid pair of coordinate names

Check that the column with presences is correctly formatted

Check the balance of presences vs pseudoabsences among splits

Clamp the predictors to match values in training set

Obtain and format the class thresholds for ensemble objects

Obtain and format results produced by tuning functions for ensemble ob...

Make a confusion matrix dataframe for multiple thresholds

Control wrappers

Distance between the distribution of climate values for presences vs b...

Create explainer from your tidysdm ensembles.

Multivariate environmental similarity surfaces (MESS)

Filter to retain only variables that have low collinearity

Deprecated: Filter to retain only variables below a given correlation ...

Get the response variable from a formula

Create a formula for gam

Split violin geometry for ggplots

Get default grid cellsize for a given dataset

Get default grid cellsize for a given dataset

Maximum Cohen's Kappa

Convert a geographic distance from km to m

Make a mask from presence data

Parameters for maxent models

MaxEnt model

Wrapper to fit maxnet models with formulae

Wrapper to predict maxnet models

Compute overlap metrics of the two niches

Find threshold that maximises Kappa

Find threshold that gives a target sensitivity

Find threshold that maximises TSS

Find threshold that optimises a given metric

Warn if some times are outside the range of time steps from a raster

Pairwise matrix of scatterplot for stars objects

Pipe operator

Plot presences vs background

Make predictions for a whole raster

Predict for a repeat ensemble set

Predict for a simple ensemble set

Probability metrics for sf objects

simple function to convert probability to binary classes

Recipe for sf objects

Repeat ensemble

Sample background points for SDM analysis for points with a time point...

Sample background points for SDM analysis

Sample pseudo-absence points for SDM analysis for points with a time p...

Sample pseudo-absence points for SDM analysis

Metric set for SDM

Model specification for a Boosted Trees model for SDM

Model specification for a GAM for SDM

Model specification for a GLM for SDM

Model specification for a MaxEnt for SDM

Model specification for a Random Forest for SDM

Simple ensemble

Simple Training/Test Set Splitting for spatial data

Thin point dataset to have 1 observation per raster cell per time slic...

Thin point dataset to have 1 observation per raster cell

Thin points dataset based on geographic and temporal distance

Thin points dataset based on geographic distance

tidysdm: Species Distribution Models with Tidymodels

Maximum TSS - True Skill Statistics

TSS - True Skill Statistics

Convert a time interval from years to days