tidyseurat0.8.7 package

Brings Seurat to the Tidyverse

extract

Extract a character column into multiple columns using regular express...

filter

Keep rows that match a condition

formatting

Printing tibbles

full_join

Mutating joins

get_abundance_sc_long

get abundance long

get_abundance_sc_wide

get abundance wide

left_join

Mutating joins

mutate

Create, modify, and delete columns

nest

Nest rows into a list-column of data frames

pipe

Pipe operator

pivot_longer

Pivot data from wide to long

plotly

Initiate a plotly visualization

add_class

Add class to abject

aggregate_cells

Aggregate cells

join_transcripts

(DEPRECATED) Extract and join information for transcripts.

arrange

Order rows using column values

as_tibble

Coerce lists, matrices, and more to data frames

bind_rows

Efficiently bind multiple data frames by row and column

count

Count the observations in each group

distinct

Keep distinct/unique rows

drop_class

Remove class to abject

ggplot

Create a new ggplot from a tidyseurat

glimpse

Get a glimpse of your data

group_by

Group by one or more variables

group_split

Split data frame by groups

inner_join

Mutating joins

join_features

join_features

pull

Extract a single column

quo_names

Convert array of quosure (e.g. c(col_a, col_b)) into character vector

rename

Rename columns

return_arguments_of

returns variables from an expression

right_join

Mutating joins

rowwise

Group input by rows

sample_n

Sample n rows from a table

select

Keep or drop columns using their names and types

separate

Separate a character column into multiple columns with a regular expre...

slice

Subset rows using their positions

summarise

Summarise each group down to one row

tbl_format_header

Format the header of a tibble

tidy

tidy for Seurat objects

unite

Unite multiple columns into one by pasting strings together

unnest

Unnest a list-column of data frames into rows and columns

It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse.

  • Maintainer: Stefano Mangiola
  • License: GPL-3
  • Last published: 2025-11-10