A Tidy Tool for Phylogenetic Tree Data Manipulation
ancestor
as.treedata
as.ultrametric
child
drop.tip method
get.data method
get.fields method
get.treetext method
get_tree_data
getNodeNum
groupClade
groupOTU
isTip
MRCA
Nnode
extract the node label of phylo, treedata or tbl_tree
nodeid
nodelab
offspring
parent
Objects exported from other packages
root
rootnode
show method
sibling
the tip or internal node label assign of tbl_tree phylo and treedata
extract the tip label of phylo treedata or tbl_tree
Subset tree objects by related nodes
Class "treedata" This class stores phylogenetic tree with associated d...
treedata
Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Useful links