double_enrich function

draw enrichment bar plots for both up and down genes

draw enrichment bar plots for both up and down genes,for human only.

double_enrich(deg, n = 10, color = c("#2874C5", "#f87669"), species = "human")

Arguments

• deg: a data.frame contains at least two columns:"ENTREZID" and "change"
• n: how many terms will you perform for up and down genes respectively
• color: color for bar plot
• species: choose human or mouse, or rat, default: human

Returns

a list with kegg and go bar plot according to up and down genes enrichment result.

Examples

## Not run:

if(requireNamespace("org.Hs.eg.db",quietly = TRUE)&
   requireNamespace("labeling",quietly = TRUE)){
   double_enrich(deg)
}else{
  if(!requireNamespace("org.Hs.eg.db",quietly = TRUE)) {
    warning("Package 'org.Hs.eg.db' needed for this function to work.
        Please install it by BiocManager::install('org.Hs.eg.db')",call. = FALSE)
  }
  if(!requireNamespace("labeling",quietly = TRUE)) {
    warning("Package 'labeling' needed for this function to work.
        Please install it by install.packages('labeling')",call. = FALSE)
  }
}
## End(Not run)

See Also

quick_enrich

Author(s)

Xiaojie Sun