Expression Data Analysis and Visualization
box_surv
cor.test for all variables
cor.test for one variable with all variables
corheatmap
corscatterplot
draw enrichment bar plots for both up and down genes
draw boxplot for expression
draw a heatmap plot
draw heatmap plots
draw_KM
draw PCA plots
draw_tsne
draw a venn plot
draw a volcano plot
draw_volcano2
count unique values in every columns for data.frame
edges_to_nodes
exp_boxplot
exp_surv
find annotation package or files
geo_download
geo_parser
get_cgs
get count from GEO
get_deg_all
get_deg
get gpl txt from GEO
ggheat
hypertest
interaction_to_edges
intersect_all
make_tcga_group
match_exp_cl
multi_deg_all
multi_deg
plcortest
plot_deg
point_cut
quick_enrich
risk_plot
sam_filter
surv_cox
surv_KM
t_choose
trans_array
trans_entrezexp
trans_exp_new
trans_exp
union_all
The Gene Expression Omnibus (<https://www.ncbi.nlm.nih.gov/geo/>) and The Cancer Genome Atlas (<https://portal.gdc.cancer.gov/>) are widely used medical public databases. Our platform integrates routine analysis and visualization tools for expression data to provide concise and intuitive data analysis and presentation.