geo_parser function

geo_parser

download gse data and get informations

download gse data and get informations

geo_parser(gse, destdir = getwd())

geo_parser(gse, destdir = getwd())

Arguments

• gse: gse assession number
• destdir: The destination directory for data downloads

Returns

an ExpressionSet object list

an ExpressionSet object list

Examples

## Not run:

if(requireNamespace("GEOquery",quietly = TRUE)){
  gse = "GSE42872"
  a = geo_download(gse,destdir=tempdir())
}else{
  print("Package 'GEOquery' needed for this function to work.
         Please install it by BiocManager::install('GEOquery')")
}
## End(Not run)

## Not run:

if(requireNamespace("GEOquery",quietly = TRUE)){
  gse = "GSE42872"
  a = geo_download(gse,destdir=tempdir())
}else{
  print("Package 'GEOquery' needed for this function to work.
         Please install it by BiocManager::install('GEOquery')")
}
## End(Not run)

See Also

find_anno

find_anno

Author(s)

Xiaojie Sun