get_count_txt function

get count from GEO

get RNA-seq count file from GEO database

get_count_txt(gse, destdir = getwd(), download = FALSE)

Arguments

• gse: gse assession number
• destdir: The destination directory for data downloads.
• download: download the txt file or not

Returns

a list with deg data.frame, volcano plot and a list with DEGs.

Examples

get_count_txt("GSE162550",destdir = tempdir())

See Also

geo_download

Author(s)

Xiaojie Sun