Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Estimate of confidence intervals of molecular clock parameters with us...
Estimate a time-scaled tree and fit a molecular clock
Sample node dates conditional on root time using Gibbs sampling and da...
Produce a goodness of fit plot
Detect lineages with unusually large evolutionary divergence under the...
Detect terminal lineages with unusually large evolutionary divergence ...
Estimate of confidence intervals using parametric bootstrap for molecu...
Plots lineages through time and confidence intervals estimated by boot...
Use parametric bootstrap to test if relaxed clock offers improved fit ...
Plot evolutionary distance from root to sample times and estimated int...
Compute a vector of numeric sample times from labels in a sequence ali...
treedater fits a molecular clock to a phylogenetic tree and estimates ...
Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.