outlierLineages function

Detect lineages with unusually large evolutionary divergence under the fitted treedater model

Outliers are detected using the stats::p.adjust function and the 'fdr' function. The test requires that dater was used with the temporalConstraints=TRUE.

outlierLineages(td, alpha = 0.05, type = c("tips", "internal", "all"))

Arguments

• td: A fitted treedater object
• alpha: The tail probability used for classifying lineages as outliers
• type: Should outliers be detected on tip lineages, interal lineages, or all lineages?

Returns

A data frame summarizing for each lineage the p values, adjusted p values ('q'), likelihood, rates, and branch lengths.

See Also

dater outlier.tips