treestats1.70.5 package

Total internal path length

Stairs2 index

Total path length

Height of a tree.

Treeness statistic

Collection of phylogenetic tree statistics

Variance of external branch lengths of a tree, e.g. of branches leadin...

Variance of internal branch lengths of a tree, e.g. of branches not le...

Variance of branch lengths of a tree, including extinct branches.

Variance of leaf depth statistic

Variance of all pairwise distances.

Wiener index

Branching times of a tree

Area per pair index

Average leaf depth statistic. The average leaf depth statistic is a no...

Average ladder index

Average vertex depth metric

B1 metric

B2 metric

Aldous' beta statistic.

Blum index of (im)balance.

Apply all available tree statistics to a single tree

Apply all tree statistics related to branching times to a single tree.

Calculate all topology based statistics for a single tree

Cherry index

Corrected Colless index of (im)balance.

Quadratic Colless index of (im)balance.

Colless index of (im)balance.

Create a fully balanced tree

Create an unbalanced tree (caterpillar tree)

Crown age of a tree.

Diameter statistic

Double Cherry index

Eigen vector centrality

Intensive quadratic entropy statistic J.

Equal weights Colless index of (im)balance.

Four prong index

Gamma statistic

ILnumber

Imbalance steps index

J^1 index.

Convert an L table to phylo object

Symmetry nodes metric

Laplacian spectrum statistics, from RPANDA

Provides a list of all available statistics in the package

Convert an L table to newick string

Stepwise increase the imbalance of a tree

Maximum betweenness centrality.

Maximum closeness

Total cophenetic index.

Maximum difference of widths of a phylogenetic tree

Maximum depth metric

Maximum ladder index

Maximum width of branch depths.

Mean length of external branch lengths of a tree, e.g. of branches lea...

Mean length of internal branches of a tree, e.g. of branches not leadi...

Mean branch length of a tree, including extinct branches.

Reference nLTT statistic

Mean I statistic.

Mean Pairwise distance

Adjancency Matrix properties

Laplacian Matrix properties

Mean Nearest Taxon distance

Maximum width of branch depths divided by the maximum depth

Normalized LTT statistic

Number of tips of a tree, including extinct tips.

Function to generate an ltable from a phy object.

Phylogenetic diversity at time point t

Pigot's rho

Number of pitchforks

Phylogenetic Species Variability.

a function to modify an ltable, such that the longest path in the phyl...

Rogers J index of (im)balance.

Root imbalance

Rquartet index.

Sackin index of (im)balance.

Stairs index