epitimes
The times at which we declare a new outbreak has started based on the threshold parameter.
epitimes(data, threshold, epi.length = 3)
data: The inputed data frame with the cases vector. This is the same data you put into runtsir.threshold: The required number of cases observed to declare it an outbreak.epi.length: The required duration (in 52/IP weeks) to declare it an outbreak.Useful links