ubiquity2.0.3 package

Extracts Covariates for a Subject from a Subject Data File

Archive Estimation Results

Calculate AUC for Sparse Data

Build the System File

Calculate the halflife of data

Calculates the Value of the Specified Objective Function

GA Wrapper for calculate_objective

pso Wrapper for calculate_objective

Calculates the Variance in od_general

Verify System Steady State

Compares Estimate to Bounds

Performs parameter estimation

Create Full Parameter Vector from Estimation Subset

Parse Prototype Functions for Arguments

Generates a Parameter Based on <IIV:?> in the System File

Generate Text Report with Estimation Results

Generate Subject

Make Pretty ggplot x- or y-Axis Log 10 Scale

Make Pretty ggplot x-Axis Log 10 Scale

Make Pretty ggplot y-Axis Log 10 Scale

Wrapper for system_log_entry Used in ShinyApp

Implementation of the linspace Function from Matlab

Implementation of the logspace Function from Matlab

Makes Forcing Function From Times and Values

Select Records from NONMEM-ish Data Set

Pad String with Spaces

Parse String for Prototype Functions

Make ggplot Figure Pretty

Simulate With Titration or Rule-Based Inputs

Simulate Individual Response

Define Sample Times Around Events

Run Population Simulations

Calculate Solution Statistics

Converts the Wide/Verbose Output Simulation Functions into Data Frames

Check For Perl and C Tools

Verify System Steady State

Clear all Cohorts

Define Estimation Cohort

Define Cohorts from NONMEM Input File

Control Estimation Process

Fetch Current Parameter Guesses

Fetch Variability Terms

Fetch NCA Results

Columns in NCA Analysis

Fetch System Parameters

Extracts the officer Object From the Specified ubiquity Report

Extracts the onbrand Object From the Specified ubiquity Report

Fetch Mathematical Set

Create New Analysis Template

Fetch System Timescale

Initialize GLP study design

Design GLP Study For a Scenario

Loading Datasets

Save variables to files

Add Log Entry

Initialize System Log File

List NCA parameters, text names and descriptions

Automatic NCA

Summarize NCA Results in Tabular Format

Create New system.txt File

Fetch List of Available System Templates

Titration Rules

Check NONMEM Dataset for Automatic Definitions

General Observation Details Function

Plot Estimation Results

Require Suggested Packages

Adds Content to a Word Report

Add Slide to a Powerpoint Report

Generate a Report from Parameter Estimation

Report NCA

Initialize a New Report

Save Report to a File

Generate Details about Report Template

Selecting Parameter Sets

Set Bolus Inputs

Set Covariate Values

Alter Initial Guess and Parameter Bounds

Set Variability Terms

Setting Analysis Options

Set Value for Parameter

Set Infusion Rate Inputs

Sets the officer Object for the Specified ubiquity Report

Sets the onbrand Object for the Specified ubiquity Report

Actual Function Called by SI_TT_BOLUS

Define Titration Triggers and Actions

Actual Function Called by SI_TT_RATE

Simulate Results at Estimates

Convert Time in Timescale to Simulation Time

View Information About the System

Zero All Model Inputs

Implementation of Matlab tic() command

Calculate Timecourse Statistics for a Matrix of Responses

Implementation of Matlab toc() command

Check Names of Cohorts, Analyses, Reports, etc.

Converts Numeric Variables into Padded Strings

Convert R Objects to Strings

Print and Log Messages

Fetch Ubiquity Workshop Sections