run_simulation_ubiquity function

Simulate Individual Response

Controls the execution of individual simulations with deSolve using either R scripts or loadable C libraries.

run_simulation_ubiquity(SIMINT_parameters, SIMINT_cfg, SIMINT_dropfirst = TRUE)

Arguments

• SIMINT_parameters: vector of parameters
• SIMINT_cfg: ubiquity system object
• SIMINT_dropfirst: when TRUE it will drop the first sample point (prevents bolus doses from starting at 0)

Returns

The simulation output is mapped (som) is a list. time-course is stored in the simout element.

• The first column (time) contains the simulation time in the units of the simulation.
• Next there is a column for each: State, output and system parameter
• Models with covariate will contain the initial value (prefix: SIMINT_CVIC_) as well as the values at each time point
• Each static and dynamic system parameter is also passed through
• A column for each timescale is returned with a "ts." prefix.

See Also

Simulation vignette (vignette("Simulation", package = "ubiquity"))