Analysing Convergent Evolution using the Wheatsheaf Index
Backtransforms coefficient estimates from logistic regression
Plots error bars on a barplot
Plots a barplot from logistic regression parameter estimates
Calculates likelihood ratio test
Summarising distributions of (exam/coursework/etc.) marks for (UK) uni...
Model selection table for categorical trait evolution models fit in th...
Model selection table for phenotypic evolution models fit in the packa...
Model selection table for phylogenetic (logistic) regressions fit in t...
Model selection table for evolutionary pathway models fit in the packa...
Model selection table based on information theoretical measures.
Plotting and/or retrieving distribution of divergence times of a pair ...
Calculates phylogenetic imbalance ratio (PIR)
Provides a visualisation of up to three-dimensional trait space (not a...
Prunes a phylogenetic tree to match a vector (e.g. of species names in...
Generates the inputs necessary to run richness.yule.test() in ape
Calculates standard error
Tests for particularly strong convergent evolution given topological c...
Checks a set of phylogenetic trees to confirm they are ultrametric and...
Checks a set of phylogenetic trees to confirm they are ultrametric and...
Calculates Wheatsheaf index with 95% confidence intervals
Tests for presence of convergent evolution (over and above that expect...
Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other unrelated but perhaps useful functions.